Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKVRGFEVVNEASRKFPEQTISLPIRGDKGSAGYDFFSNETVTIVPGEKHIFWTDIKSYMQEDEVLNIYVRSSIGIKKGLLLCNGTGIIDSSYYSNPGNDGNIGIAIKNFSNEPVSIEAGERVAQGVFQKYLVADTDI----VANESRVGGVGSTGR
3LQW Chain:A ((29-151))
--------------KKLVEDAIVPTRGSKCAAGIDLYSNTNFIIQPHERFLVSTGVSVQIPHQCYGRIAPRSSLALKYGIDVG--AGVIDEDYR------GEIKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISEVKELNTT------------
General information:
TITO was launched using:
RESULT:
Template:
3LQW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55572 for 793 contacts (-70.1/contact) +
2D Compatibility (PS) -12832 + (NN) -1117 + (LL) 388
1D Compatibility (HY) -4400 + (ID) 1700
Total energy: -75233.0 ( -94.87 by residue)
QMean score : 0.396
(partial model without unconserved sides chains):
PDB file :
Tito_3LQW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LQW-query.scw
PDB file :
Tito_Scwrl_3LQW.pdb
: