Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKEAGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAEKYGADQVQKWRRSYDTLPPLLEENDE--RQAKNDRRYQLLDT--HAIPSGENLKVTLERVIPYWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGISDDEIMDLEIPTGVPLVYELNADLKPVNKYYLDK
2H4Z Chain:B ((5-232))
-KLIMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVLNRSIHTAWLILEELGQEWVPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPIEESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNERIAPEVLRGKTILISAHGNSSRALLKHLEGISDEDIINITLPTGVPILLELDENLRAVGPH----
General information:
TITO was launched using:
RESULT:
Template:
2H4Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85037 for 1848 contacts (-46.0/contact) +
2D Compatibility (PS) -24157 + (NN) -5710 + (LL) 464
1D Compatibility (HY) -18800 + (ID) 5700
Total energy: -138940.0 ( -75.18 by residue)
QMean score : 0.553
(partial model without unconserved sides chains):
PDB file :
Tito_2H4Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H4Z-query.scw
PDB file :
Tito_Scwrl_2H4Z.pdb
: