Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPPVDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
4JLO Chain:B ((1-198))
MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHG----NVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRRINPETGEVYHVKYNPPPPGVK--VIQKEDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG---
General information:
TITO was launched using:
RESULT:
Template:
4JLO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68769 for 1501 contacts (-45.8/contact) +
2D Compatibility (PS) -21275 + (NN) -8760 + (LL) 856
1D Compatibility (HY) -17600 + (ID) 4400
Total energy: -119948.0 ( -79.91 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_4JLO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JLO-query.scw
PDB file :
Tito_Scwrl_4JLO.pdb
: