Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDELKKLAGVTAAKYVKNGMIVGLGTGSTAYFFVEEIGRRVKEEG-LQVVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKLPVEVVRYGSERLFRVFKSKGYCPSFRETEGDRFITDMGNYIIDLDLKKIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK
1UJ6 Chain:A ((6-225))
-ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLGRGPVPVEIVPFGYRATLKAIADLGGEPELRMDGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVEELLP
General information:
TITO was launched using:
RESULT:
Template:
1UJ6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112009 for 1935 contacts (-57.9/contact) +
2D Compatibility (PS) -24069 + (NN) -10573 + (LL) 412
1D Compatibility (HY) -14800 + (ID) 4650
Total energy: -165689.0 ( -85.63 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_1UJ6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UJ6-query.scw
PDB file :
Tito_Scwrl_1UJ6.pdb
: