Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----------------------------------MTNTVTPKETAGSFINKVLGGTATAIVVALIPNAIL-ATFLKPFLSYGLAAEF-------LHIVQVFQFFTP--IMAGFLIG-QQFKFTPMQQLAVGGAAYIGSGAWAYTEVIQKGVATGSFQLRGIG------------DLINMMLTAALAVLAVKWFGNKFGSLTII------LLPIIIGTGVGYLGWKLLPYVSYVTTLIGQGINSFTTLQPIAMSILIA---------------------------------MAFSMLIV--SPISTVAIGLAIGLNGMSASAASMGVASTTAV------------------LVWATMKA-NKSGVPIAIALGAMKMMMPNFLKHPV------------MAIPMLMTATVSSLTVPLFKLVGTPAS---SGFGLVGAVGPIASFEAGASMLIVILSWLVIPFAVGFV---SHKICKDILKLYKDDIFVFEGQN---- |
| 3OC2 Chain:A ((35-545)) | ARSVRHIAIPAHRGLITDRNGEPLAVSTPVTTLWANPKELMTAKERWPQLAAALGQDTKLFADRIEQNAEREFIYLVRGLTPEQGEGVIALKVPGVYSIEEFRRFYPAGEVVAHAVGFTDVDDRGREGIELAFDEWLA-GVPGKRQVLKDRRGRVIKDVQVTKNAKPGKTLALSIDLRLQYLAHRELRNALLENGAKAGSLVIMDVKTGEILAMTNQPTYNPNNRRNLQPAAMRNRAMIDVFEPGSTVKPFSMSAALASGRWKPSDIVDVYPGTLQIGRYTIRDVSRNSRQLDLTGILIKSSNVGISKIAFDIGAESIYSVMQQVGLGQDTGLGFPGERVGNLPNHRKWPKAETATLAYGYGLSVTAIQLAHAYAALANDGKSVPLSMTRVDRVPDGVQVISPEVASTVQGMLQQVVEAQGGVFRAQVPGYHAAGKSGTARKAYRSLFAGFAPATDPRIAMVVVIDEPFGGLVSAPVFSKVMAGALRLMNVPPDNL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OC2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -331287 for 2865 contacts (-115.6/contact) +
2D Compatibility (PS) -37266 + (NN) -4898 + (LL) -28
1D Compatibility (HY) 1600 + (ID) 2450
Total energy: -374329.0 ( -130.66 by residue)
QMean score : 0.166
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