Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKIIGLTGGIASGKSTVTKIIRESGFKVIDADQVVHKLQAKGGKLYQALLEWLGPEILDADGELDRPKLSQMIFANPDNMKTSARLQNSIIRQELACQRDQLKQ-TEEIFFVDIPLLIEEKYIKWFDEIWLVFVDKEKQLQRLMARNNYSREEAELRLSHQMPLTDKKSFASLIINNNGDLITLKEQILDALQRL
2F6R Chain:A ((75-268))
-LYVLGLTGISGSGKSSVAQRLKNLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERDGLSEAAAQSRLQSQMSGQQLVEQSNVVLSTLWESHVTQSQVEKAWNLL
General information:
TITO was launched using:
RESULT:
Template:
2F6R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87763 for 1496 contacts (-58.7/contact) +
2D Compatibility (PS) -21372 + (NN) -11642 + (LL) 208
1D Compatibility (HY) -10800 + (ID) 2450
Total energy: -133819.0 ( -89.45 by residue)
QMean score : 0.645
(partial model without unconserved sides chains):
PDB file :
Tito_2F6R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2F6R-query.scw
PDB file :
Tito_Scwrl_2F6R.pdb
: