Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------------MSKADKALLIVDMINNFEFDMGETLAKKTEKIVPHILSLKEHARQNEWPIIYINDHYGLWQADIKNIQQE-----CTNERSKDIITKIAPVDADYFLIKPKHSAFYETALHTLLTELQVRHIIITGIAGNICVLFTANDAYMREYSITIPKDCIASNSDEDNEFALTMMENVLFAEITTEEQIIEK
1NF9 Chain:A ((1-207))
MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLRPLP---ESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELAPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASR-CAMVVTTDEVLE-
General information:
TITO was launched using:
RESULT:
Template:
1NF9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135831 for 1427 contacts (-95.2/contact) +
2D Compatibility (PS) -18837 + (NN) -6072 + (LL) 572
1D Compatibility (HY) -8800 + (ID) 1650
Total energy: -170618.0 ( -119.56 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_1NF9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NF9-query.scw
PDB file :
Tito_Scwrl_1NF9.pdb
: