Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSRGLVRFFFSILAVGALITSIVGFALKWGEYRGLFLTFEAGQIFSVLFWFIGVGMIFSVISQMGFFVFLTVHRFALEILRSSSLWNLLQLFFILFVAFDLMYVRFLFFGESGESLAGYAWLPVFLLIFGVITAYIKQKQSSKKTFVSSLFLMVVITALEWFPALRVNDEDWLYLMLFPLMACNAFQLLMLPKFAAK
3E8G Chain:B ((58-94))
------------------------------------------GKIFTILYIFIGIGLVF------GF-----IHKLAVNVQLPSILSNLV------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3E8G.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15274 for 151 contacts (-101.2/contact) +
2D Compatibility (PS) -3829 + (NN) -696 + (LL) 16300
1D Compatibility (HY) -7200 + (ID) 850
Total energy: -11549.0 ( -76.48 by residue)
QMean score : 0.081
(partial model without unconserved sides chains):
PDB file :
Tito_3E8G.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3E8G-query.scw
PDB file :
Tito_Scwrl_3E8G.pdb
: