Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---MLEKIIKQKKEEVKTLVL--PVEQPFEK-----RSFKEALASPNRFIGLIAEVKKASPSKGLIKEDFVPVQIAKDYEAAKADAISVLTDTPFFQGENSYLSDVKRAVSIPVLRKDF-IDSLQVEES-RRIGADAILLIGEVLDPLHLHELYLEAGEKGMDVLVEVH-DASTLEQILKVFTPDILGVNNRNLKTFETSVKQTEQIASLVPKESLLVSESGIGSLEHLTFVNEHGARAVLIGESLMRQTSQRKAIHALFRE----
1PII Chain:? ((1-255))MQTVLAKIVADKAIWVEARKQQQPLASFQNEVQPSTRHFYDALQGAR--TAFILECKKASPSKGVIRDDFDPARIAAIYKH-YASAISVLTDEKYFQGSFNFLPIVSQIAPQPILCKDFIIDPYQIYLAR-YYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSN--EEEQERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGINTYAQVRELSH-FANGFLIGSALMAHD----DLHAAVRRVLLG


General information:
TITO was launched using:
RESULT:

Template: 1PII.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1315 -21144 -16.08 -88.84
target 2D structure prediction score : 0.54
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -16.08
2D Compatibility (Sec. Struct. Predict.) : 0.54
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.416

(partial model without unconserved sides chains):
PDB file : Tito_1PII.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1PII-query.scw
PDB file : Tito_Scwrl_1PII.pdb: