Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIIPPRLKEPLYRLYELRLRQGLAASKSDLPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEEICAPANHWSVRT--VGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSARHRSYGR
2VG3 Chain:B ((55-282))
------------------------------LPNHVAIVMDGNGRWATQRGLARTE-GHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRRDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREI-AREVAAGRLNPERITEST---IARHLQRPDIPDVDLFLRTSGEQRSSNFMLWQAAYAEYIFQDKLWPDYDRRDLWAACEEYASRTRRFG-
General information:
TITO was launched using:
RESULT:
Template:
2VG3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119470 for 1776 contacts (-67.3/contact) +
2D Compatibility (PS) -24443 + (NN) -7370 + (LL) 2872
1D Compatibility (HY) -14400 + (ID) 4150
Total energy: -166961.0 ( -94.01 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_2VG3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG3-query.scw
PDB file :
Tito_Scwrl_2VG3.pdb
: