Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVAVLSGAGISAESGVPTFRDDKNGLWARFDPYELSSTQGWLRNPERVWGWYLWRHYLVANVEPNDGHRAIAAWQDHAEV-SVITQNVDDLHERAGSGAVHHLHGSLFEFRCARCGVPYT--DALPEMPEPAIEVEPPVCD-CGGLIRPDIVWFGEPLPEEPWRSAVEATGSADVMVVVGTSAIVYPAAGLPDLALARGTAVIEVNPEPTPLSGSATISIRESASQALPGLLERLPALLK
2H4H Chain:A ((19-227))
-----LTGAGISTPSGIPDFRG-PN----------VFDIDFFYSHPEEFYRFAKEGIFPMLQAKPNLAHVLLAKLEEKGLIEAVITQNIDRLHQRAGSKKVIELYGNVEEYYCVRCEKKYTVEDVIKKLESSDV----PLCDDCNSLIRPNIVFFGENLPQDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFDDIATLK---------------------
General information:
TITO was launched using:
RESULT:
Template:
2H4H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79521 for 1632 contacts (-48.7/contact) +
2D Compatibility (PS) -21123 + (NN) -6676 + (LL) 3312
1D Compatibility (HY) -20000 + (ID) 3800
Total energy: -127808.0 ( -78.31 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_2H4H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2H4H-query.scw
PDB file :
Tito_Scwrl_2H4H.pdb
: