Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSADLTAHARIREAAIEQFGRHGFG-VGLRAIAEAAGVSAALVIHHFGSKEGLRKACDDFVAEEIRSSKAAALKS--NDPTTW----LAQMAEIESYAPLMAYLVRSMQS-GGE---LAKMLWQKMIDNAEEYLDEGVRAGTVKPSRDPRARARFLAITGGGGFLLYLQMHENPTDLRAALRDYAHDMVLPSLEVYTEGLLADRAMYEAFLAEAQQGEAHVG
1VI0 Chain:A ((8-196))
------PKYMQIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKATAKEKLALVISKHFSLLAGDHNLAIVTQLELRQSNLELRQKINEILKGYLNILDGILTEGIQSGEIKEGLDVRLARQMIFGTIDETVTTWVMNDQK---------YDLVALSNSVLELLVSGIHNK-------------------
General information:
TITO was launched using:
RESULT:
Template:
1VI0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56721 for 1228 contacts (-46.2/contact) +
2D Compatibility (PS) -19873 + (NN) -10800 + (LL) 3072
1D Compatibility (HY) -7600 + (ID) 1350
Total energy: -93272.0 ( -75.95 by residue)
QMean score : 0.391
(partial model without unconserved sides chains):
PDB file :
Tito_1VI0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VI0-query.scw
PDB file :
Tito_Scwrl_1VI0.pdb
: