Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MITATDLEVRAGARILLAPDGPDLRVQPGD-RIGLVGRNGAGKTTTLRILAGEVEPYAGSVTRAGEIGYLPQDPKVGDLDVLARDRVLSARGLDVLLTDLEKQQALMAEVADEDERDRAIRRYGQLEERFVALGGYGAESEAGRICASLGLPERVLTQRLRTLSGGQRRRVELARILFAASESGAGNSTTLLLDEPTNHLDADSLGWLRDFLRLHTG---GLVVISHNVDLVADVVNKVWFLDAVRGQVDVYNMGWQRYVDARATDEQRRIRERANAERKAAALRAQAAKLGAKATKAVAAQNMLRRADRMMAALDEERVADKVARIKFPTPAACGRTPLVANGLGKTYGSLEVFTGVDLAIDRGSRVVILGLNGAGKTTLLR-LLAGVEQPDTGVLEPGYGLRIGYFAQEHDTLDNDATVWENVRHAAPDAGEQDLRGL-LGAFMFTGPQLEQPAGTLSGGEKTRLALAGLVASTANVLLLDEPTNNLDPASREQVLDALRSY-RG---AVVLVTHDPGA-AAALGPQR-VVLLPDGTEDYWSDE-Y-RDL-IELA--------------------------------------- |
| 1YQT Chain:A ((24-538)) | ---EEDCVHRYGVN---AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNE------LQNYFEKLKNGEIRP----VVKPQYVDLIPKAVKGKVIELLKKADET----------GKLEEVVKALELEN-VLEREIQHLSGGELQRVAIAAALLR-------NATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVY-----------------------GEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTY------------------PRLVKDYGS-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLA-GVEEPTEGKIEWDLT---VAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRALPPMGMREGMNRFLASIGITFRRDPDTGRPRANKEGSVKDREQKEKGEYYYIA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1YQT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -74641 for 3820 contacts (-19.5/contact) +
2D Compatibility (PS) -48596 + (NN) -15269 + (LL) 5484
1D Compatibility (HY) -15200 + (ID) 4900
Total energy: -153122.0 ( -40.08 by residue)
QMean score : 0.280
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