Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMDLSQRLAGRVAVITGGGSGIGLAAGRRMRAEGATIVVGDVDVEA--------GGAAADELSGLFVPTDVCDEDAVNGLFDGAAETYGRIDIAFNNAGIS-PPEDNLIENTELAAWQRVQDVNLKSVYLCCRAALRHMVLAGKGSIVNTASFVAVMGSATSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQELFAKNPERAARRMVHVPLGRFAEPDEIAAAVAFLASDDASFITASTFLVDGGISSAYVTPL
2CFC Chain:B ((3-249))
----------RVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKV--LRVRADVADEGDVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIAS-VASLVAFPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRL-DQPELRDQVLARIPQKEIGTAAQVADAVMFLAGEDATYVNGAALVMDGAYTA------
General information:
TITO was launched using:
RESULT:
Template:
2CFC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141141 for 2054 contacts (-68.7/contact) +
2D Compatibility (PS) -26018 + (NN) -13308 + (LL) 1448
1D Compatibility (HY) -20000 + (ID) 4500
Total energy: -203519.0 ( -99.08 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_2CFC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CFC-query.scw
PDB file :
Tito_Scwrl_2CFC.pdb
: