Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYEGPKTKFHALMQEQIHNEFTAAQQYVAIAVYFDS--EDLPQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTVR-NQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQ-WFLQEQIEEVALMATLVRVADRAGA-----NLFELENFVAREVDVAPAASGAPHAAGGRL
4Y08 Chain:A ((10-177))
---RQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSHEEREHAEKLMKLQNQRGGRIFLQDIKKPDCDDWESGLNAMECALHLEKNVNQSLLELHKLATDKNDPHLCDFIETHYLNEQVKAIKELGDHVTNLRKMGAPESGLAEYLFDKHTLG-------------------
General information:
TITO was launched using:
RESULT:
Template:
4Y08.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57854 for 1215 contacts (-47.6/contact) +
2D Compatibility (PS) -17959 + (NN) -15728 + (LL) 1136
1D Compatibility (HY) -6800 + (ID) 1900
Total energy: -99105.0 ( -81.57 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_4Y08.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4Y08-query.scw
PDB file :
Tito_Scwrl_4Y08.pdb
: