Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MADALDSLRLMRTQERPAQVFVRGQGSWLWDSDGRAFLDFTQGLAVNCLGHSPSVLVQALARQARELVSAGPGLLNRPVL-----ALAQRLC-LATGS-DQAYFLTSGAEANEAAIALARKWGRLHRGGAQRIVSTVNSIHGRTPGTLTACGKPAQHG-----LEGFARVPFNDLDAMAAAIDEETV-AVMLEPVQGDAGVIPATLDYLRGIERLCRQRGVLLILDEVQTGIGRCGALLAEELYGVRADIVTLGKGLGAG-VPLSALLARGN--ACCFEPGDQL----GTHHGNALMTAAGLAVLNTVLEPGFLEQVREQGTHLRDGLARVARRYGH-GPLRGQGLFWGLPLIGQRAPAVVRAAFGEGLLINAPQPHCLRFSPALTVSRANVDEMLRRLERALARVANRHEEVA |
4PPM Chain:B ((407-740)) | ----VDFLKLQRCD----NVFRSAAGTQLYDDAGEAFLDMVAGYGCLNLGHNPQPVVNALKNY---LDAQGPNFIQYISIPEQTAKLAEVLCRLAPGNMGRVFFSNSGTEAVEAAMKIAKA-----STGKPGIAYLRNSYHGKTLGALSITGRDKHRRYFTPLLDAMVEVPFGDLAALREALNREDVGALMIEPIQGEGGVHIPPAGYLQAVQQLCRETGVLLMVDEVQTGLGRTGKLFACEWDGIEPDVLMLSKSLSGGLIPIGATLCRADLWQKAYGTADRFLVHSSTYGGGNLASVVALSALREILAQDLVGHAERMGAYFKQALSEIAARYPFVSEVRGRGLMLGI---------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4PPM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -178248 for 2553 contacts (-69.8/contact) +
2D Compatibility (PS) -34836 + (NN) -22966 + (LL) 6572
1D Compatibility (HY) -25600 + (ID) 5850
Total energy: -260928.0 ( -102.20 by residue)
QMean score : 0.426
|
|
|