Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKTRKDVCVPRHVAIIMDGNNRWAKKRLLPGVA-GHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQRPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTRFLLQVAANYGGQWDIVQAAQRL-AREVQGGHLAADDISAELLQGC---LVTGDQPLPDLCIRTGGEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARPSC
2VG1 Chain:B ((3-228))
---------LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVV--EEICAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEELVDAVTVEGISENLYTSGQPDPDLVIRTSGEQRLSGFLLWQSAYSEMWFTEAHWPAFRHVDFLRALRDYSAR-------------------
General information:
TITO was launched using:
RESULT:
Template:
2VG1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144544 for 1756 contacts (-82.3/contact) +
2D Compatibility (PS) -24781 + (NN) -17048 + (LL) 2232
1D Compatibility (HY) -17200 + (ID) 4250
Total energy: -205591.0 ( -117.08 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_2VG1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VG1-query.scw
PDB file :
Tito_Scwrl_2VG1.pdb
: