Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQRSLLFALLATLLLVGGARAETDPDYSMVLLTE-NFPPYNMAINGKNFAQEDNIDGIAVDIVREMFKRAGIKYSLTLRFPWDRIYKLALEKPGYGVFVTA--RLAEREDKFKWVGPIGPDDWVLLAKGDSPITLGSLDEAKKYRIGAYKGDAIAEFLGKNGFEADLAL-RDQENAQKLVKGQIDLWASGDPAGRYLAKQEGVTGLKTV---LRFNSDQLYLALNRETPDEVVQKLQAALDGMRKEGFVEDILNSYL
2YLN Chain:A ((51-276))
--------------------ERINNKGTVTVGTEGTYAPFTYHD------KDGKLTGYDVEVTRAVAEKLGVKVEFKE-TQWDSMMAGLKAGRFDVVANQVGLTSPERQATFDKSEPYSWSGAVLVAHNDSN--IKSIADIKGVKTAQSLTSNYGEKAKAAGA-QLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGN-DEAVAKFSTAINELKADGTLKKLGEQFF
General information:
TITO was launched using:
RESULT:
Template:
2YLN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113541 for 1791 contacts (-63.4/contact) +
2D Compatibility (PS) -23779 + (NN) -11747 + (LL) 2524
1D Compatibility (HY) -2800 + (ID) 1900
Total energy: -151243.0 ( -84.45 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_2YLN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YLN-query.scw
PDB file :
Tito_Scwrl_2YLN.pdb
: