Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIRIIGSVGSGKTTLAKKLSEWYQIDYFETDRIVWKREGI---EVR------------RTDI----EKIAVLNKI----LQQENWIIEGVHLEAWV-NES------FDQADVIIFLNLPKKQIRSQLIKRQIKQLLRLEAAHYQVKLNMLNKMFYWDDLFDQRTKPLIAEKMAQTPTKWLVVTEKTALQEIQKKLLQIISSRDIL
1TEV Chain:A ((4-196))
LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSG--RSDDNRE-------SLEKRIQTYLQSTKPIIDLY-EEM-GKVKKIDASKSVDEVFDEVVQIFDKEG--
General information:
TITO was launched using:
RESULT:
Template:
1TEV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33710 for 1131 contacts (-29.8/contact) +
2D Compatibility (PS) -17800 + (NN) -7989 + (LL) 1380
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -63969.0 ( -56.56 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_1TEV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TEV-query.scw
PDB file :
Tito_Scwrl_1TEV.pdb
: