Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRITGERIYLRPFQIIDANQKL----AFHLANKAFFEGYSMERDDRFYTIEEQQSLISRL---EDFA-ASDVEYYYGIFLNDTDELIGTINLFSILRESLQSAFIGYFLDKKHNGNGYATEAVQLIVDFGFDILGLHRIEAGVMPKNERSKQVLLKAGFHLEGLAVQNVRINGTWEDHQVLAIINPGD
2VZY Chain:A ((11-190))
-RITTPRLQLQLPTEELCDQLIDTILE----------------------EDLPFNTLSHLWQQLAGFKRDDWSLPLAVLV--DGRAVGVQALSSKDFPITRQVDSGSWLGLRYQGHGYGTEMRAAVLYFAFAELEAQVATSRSFVDNPASIAVSRRNGYRDNGLDRVAR--EGAMAEALLFRLTRDDW
General information:
TITO was launched using:
RESULT:
Template:
2VZY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89748 for 1088 contacts (-82.5/contact) +
2D Compatibility (PS) -16672 + (NN) -5050 + (LL) 1876
1D Compatibility (HY) -400 + (ID) 1450
Total energy: -111444.0 ( -102.43 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_2VZY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VZY-query.scw
PDB file :
Tito_Scwrl_2VZY.pdb
: