Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPEKLKTLRTEAGLTQKELAKIIQTSQQNIAYWEKGSRNPKHKSIEKLANVFNVSTDYLLGNTDLKNPNDLDIEKVKQSLKKSLGYNGTSDIPEDELESMAQAFIEHFKNQ
3IVP Chain:A ((13-111))
-LGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKGQHPSLQVLYDLVSLLNVSVDEFFLPASSQVKSTK-R----RQLENKID-----NFTDADLVIMESVADGIVKSK
General information:
TITO was launched using:
RESULT:
Template:
3IVP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14587 for 571 contacts (-25.5/contact) +
2D Compatibility (PS) -11112 + (NN) -7553 + (LL) 420
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -38932.0 ( -68.18 by residue)
QMean score : 0.615
(partial model without unconserved sides chains):
PDB file :
Tito_3IVP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IVP-query.scw
PDB file :
Tito_Scwrl_3IVP.pdb
: