Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLTVPAHDPAARDKPAGRIRQKNEEAILAAAEEEFARHGFKGTSMNTIAQNVGLPKANLHYYFGNKLGLYTAVLSNILELWDSTFNTL-G-VDDDPAEALARYIRAKMEFSRRYPLASRIFAMEI--ISGGECLTAHFNQDYRSWFRGRAAVFEAWIAAGRMD-PVDPVHLIFLLWGSTQHYADFASQIGLVTGRKRMSRQDFAAAADNLVRIILKGCGLTPPAA
2GFN Chain:A ((4-199))
-----------------IVDHDERRRALADAVLALIAREGISAVTTRAVAEESGWSTGVLNHYFGSRHELLLAALRRAGDIQGDRYRTILDEEGAGPIEKLRNITASILPLDERRLAMTRVFLFFYAEG----TARGEIAAFLARWRGVVRESVVAAQREGTVSTDLDADAVTVALVALTDGLAL-----QAILDPVVMKAISAEDAAARCVDAAVRR--------
General information:
TITO was launched using:
RESULT:
Template:
2GFN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103558 for 1411 contacts (-73.4/contact) +
2D Compatibility (PS) -20539 + (NN) -9283 + (LL) 1316
1D Compatibility (HY) -4000 + (ID) 1600
Total energy: -137664.0 ( -97.56 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_2GFN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GFN-query.scw
PDB file :
Tito_Scwrl_2GFN.pdb
: