Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNFSGNWKIIRSENFEEMLKALGVNMMMRKIAVAAASKPAVEIKQENDTFYIKTSTTVRTTEINFKIGEEFEEQTVDGRPCKSLVKWESGNKMVCEQRLLKGEGPKTSWSRELTNDGELILTMTADDVVCTRVYVRE
4AZQ Chain:A ((8-137))
-KDLEGKWRLMESHGFEEYMKELGVGLALRKMA--AMAKPDCIITCDGNNITVKTESTVKTTVFSCNLGEKFEETTADGRKTETVCTFQ-DGALVQHQ---QWDGKESTITRKLK-DGKMIVECVMNNATCTRVYEKV
General information:
TITO was launched using:
RESULT:
Template:
4AZQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30587 for 945 contacts (-32.4/contact) +
2D Compatibility (PS) -14729 + (NN) -8144 + (LL) 888
1D Compatibility (HY) -10800 + (ID) 2250
Total energy: -65622.0 ( -69.44 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_4AZQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4AZQ-query.scw
PDB file :
Tito_Scwrl_4AZQ.pdb
: