Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -GNAAAAKKGSEQESVKEFLAKAKEDFLKKWENPAQNTAHLDQFERIKTLGTG-SFGRVMLVKHMET-GNHYAMKILDKQKVVKL-KQIEHTLNEKRILQ--AVNFPFLVKLEFSFKDNS-NLYMVMEYVPGGEMFSHLRRI-GRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLID-QQGYIQVTDFGFAKRV----KGRTWTLCGTPEYLAPEIILSK---GYNKAVDWWALGVLIYEMAAGY-PPFFADQP--IQIYEKIVSG------KVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTD---WIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIR---VSINEKCGKEFSEF |
| 1CDK Chain:A ((8-350)) | KGSEQESVKEFLAKAKEDFLKKWENPAQNTA------H--LDQFERIKTLGT-GSFGRVMLVKHKETG-NHFAMKILDKQKVVK-LKQIEHTLNEKRILQAV--NFPFLVKLEYSFKDN-SNLYMVMEYVPGGEMFSHLRR-IGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQ-QGYIQVTDFGFAKRVKGRT----WTLCGTPEYLAPEIILS-KGY--NKAVDWWALGVLIYEMAAG-YPPFFAD--QPIQIYEKIVSGKVRFPS------HFSSDLKDLLRNLLQVDLTKRFGNLKDGVNDIKNHKWFA---TTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEEEIRVSI---NEKCGKEFSEF |
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General information:
TITO was launched using:
| RESULT:
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Template: 1CDK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -138113 for 2460 contacts (-56.1/contact) +
2D Compatibility (PS) -33485 + (NN) -16130 + (LL) 1536
1D Compatibility (HY) -43200 + (ID) 14100
Total energy: -243492.0 ( -98.98 by residue)
QMean score : 0.660
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