Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GSHMLEMRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
1GX1 Chain:A ((2-157))
------MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIK---
General information:
TITO was launched using:
RESULT:
Template:
1GX1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114873 for 1308 contacts (-87.8/contact) +
2D Compatibility (PS) -17337 + (NN) -9914 + (LL) 592
1D Compatibility (HY) -21200 + (ID) 7800
Total energy: -170532.0 ( -130.38 by residue)
QMean score : 0.780
(partial model without unconserved sides chains):
PDB file :
Tito_1GX1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GX1-query.scw
PDB file :
Tito_Scwrl_1GX1.pdb
: