Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MWSRLVAMCCFCLLLTGVSSCSKRGVNAINKMNFVVKQMKEKRVFFDYDKSDISEAGADTLLDVMEVLQDDPNVKVTLIGHTDNRGSYEYNVALGARRADAAKNFMVSCTPYLENRIKTASKGETEPLVYVADDSKNSKYEKEHAKNRRVEFSFSGMKK
3TD3 Chain:E ((13-123))
----------------------------------------ELRVFFDTNKSNIKDQYKPEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGFAWDQP---IADN----KTKEGRAMNRRVFATITGSR-
General information:
TITO was launched using:
RESULT:
Template:
3TD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5598 for 834 contacts (-6.7/contact) +
2D Compatibility (PS) -12471 + (NN) -10645 + (LL) 4016
1D Compatibility (HY) -800 + (ID) 1900
Total energy: -27398.0 ( -32.85 by residue)
QMean score : 0.459
(partial model without unconserved sides chains):
PDB file :
Tito_3TD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TD3-query.scw
PDB file :
Tito_Scwrl_3TD3.pdb
: