Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLKKIIISFSIALLLIFCFFIFFKGESPLEINISYINFYVKSKISKTFANSDVDIGSTSVILQKDGKDPYLVITNLKIVNSGFIIEAPNLFVHFKLSSLFRANVKISQVLADSVCAYVDQEKAGFKVVDFDLKNSLKAVREFFFDLNTGSRIEITNIAINKSTEGELF-IDELYIGKRED----FNVLDIRVHTKDEKGFLDDLSITIK---NRNGLLNVYGIFYNLKLKLFSEFSTLIKNYNLGKNIGFKGNFSMRISGKNEIIDGNVYILNTENRVNKNLAITNVNINLTYSDGVIGVKNFHFNLN--GTYLSLMGKMNFSANHALFRVNISKFAAKDLCTYVPDYIINSEFKSWYCDNIDGNILNVIVSFNGKINNLINNDLSDVIVVADIENGSVKFDEDFEQVRELSGDLVLKNDSLKITVNSAKFQNFTINGCNIEMNSLDREDSVLTINGQAVSDAYGLYEPIKFKLDDVIKVEKNKIGGAAKSVFNFRVFNINADDKEVNFSAKFHSEIDNLVIYDANLGRYDIKLDFGSDFIDLNGSGIVNNTQLLFDLKSSNKNESFTWSLTGDLPAQILNFNGGYFNANIESVINQDKTGYVNGNVDLSEFELRSSYLGWKNRFEDHNKILFSVKLKGANRLLIDRLDVIGSDLDIKFSGRVENGDLYLNTSSFKLPNNDLSIEIKSSKGKNIINVCGEKINLSDVLDLLGKNDSGLSNNVEVSMNVDNVIM-KEGIVIKDASLNISCTKGNCNGSQFTGQFLEDNSNILAEYSEIGLEIHADNSGMLLRSLGISKSVKNGKLSFYLSPQRESGEHYGMLSIGNFYIKDAPLLTTLLSMSSLPGIVNTIKNEGVYFYKYNAPFSHKDGTVEIEESWLEGAELGISTSGKLDIRGYKFQVEGQVIPAYSINKSLLKIPIVGKLLTGGKSRGIISIDYKASGDDKNSNIFVNFISSLTPSLLKRLLGVFDRAMTKANEAITNSLKGGMKKKFSSV |
| 1JJC Chain:B ((1-785)) | --------MRVPFSWLKAYVPELESPEVLEERLAGLGFETDRIERVFPIPRGVVFARVLEAHPIPGTRLKRLVLDAG-RTVEVVSGAENA-------------------------------RKGIGVALALPGTELP---------GLGQKVGERVIQ-GVRSFGMALSPRELGVGEYGGGLLEFPEDALPPGTPLSEAWPEEVVLDLEVTPNRPDALGLLGLARDLHALGYALVEPEAALKAEALPLPF------------------ALKVEDPEGAPHFTLGYAFGLRVAPSPLWMQRALFAAGMRPINNVVDVTNYVMLERAQPMHAFDLRFVGEGIAVRRARE---GERLKTLDGVERTLHPEDLVIAGWR-------GEESFPLGLAGVMGGA---------------ESEVREDTEAIALEVACFDPVSIRKTARRHGLRTEASHRFERGVDP--------LGQVPAQRRALSLLQALAGA--RVAEALLEAGSPKPPEAIPFRPEYANRLLGTSYPEAEQIAILKRLGC--RVEGEGPTYRVTPPSHRLDLRL-----------EEDLVEEVARIQG---YETIPLALPAFFPAPDNRGVE---------------------------APYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHL---------FPGLVRVLKENLDLDRPERALLFEVGRVFREREETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGLAFRVEAQAFPFLHPGVSGRVLVEGEEVGFLGALHPEIAQELE--------LPPVHLFELRLPLPDKPLAFQDPSRHPAAFRDLAVVVPAPTPYGEVEALVREAA-----------------------------GPYLESLALFDLYQGPPLPEGHKSLAFHLRFRHPKRT--------LRDEEVEEAVSRVAEALRARGFGLRGLDTP--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1JJC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -116827 for 6140 contacts (-19.0/contact) +
2D Compatibility (PS) -81303 + (NN) -420 + (LL) 14760
1D Compatibility (HY) -7200 + (ID) 3950
Total energy: -194940.0 ( -31.75 by residue)
QMean score : 0.198
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