Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPELPEVEIISNFLFDKIKNKQISGVTVNNWNLRVPITQNIDDVIKGKVINNIKRRGKYIIWHIDNDIVVTVHLGMSGKLIYAKGEQAQNKHDHVIFSFSDNTSIIFNDPRKFGLVIILNKEQEVNFF--NDFGIEPFTDEFNGDYLQKLLKSKKVNIKSALMNNKLIVGIGNIYASESLFRARISPLRSAQDLTYKECEKLATEIKNTLSDAIIAGGSTLKDYAQPSGSVGYFQNSFYVYGKVQKPCKICNNT-ITLIRQNGRSTYFCNACQN
4PD2 Chain:A ((1-271))-PELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYRLATLDAPREKHDHLTMKFADG-QLIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSIRTYS-ALGSTGKMQNELQVYGKTGEKCSRGHGAEIQKIKVAGRGTHFCPVCQQ


General information:
TITO was launched using:
RESULT:

Template: 4PD2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140926 for 2179 contacts (-64.7/contact) +
2D Compatibility (PS) -29310 + (NN) -15866 + (LL) 380
1D Compatibility (HY) -16400 + (ID) 4500
Total energy: -206622.0 ( -94.82 by residue)
QMean score : 0.447

(partial model without unconserved sides chains):
PDB file : Tito_4PD2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4PD2-query.scw
PDB file : Tito_Scwrl_4PD2.pdb: