Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRLVKDY--DVIMTREPGGVPTGEEIRKIVLE---GNDMDIRTEAMLFAASRREHLVLKVI-PALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
3LV8 Chain:A ((27-233))
-AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQ-LVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLER------ELDRIEKMDISFFERARERYLE-LANSDDSVVMIDAAQSIEQVTADIRRALQDWLSQV
General information:
TITO was launched using:
RESULT:
Template:
3LV8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80210 for 1555 contacts (-51.6/contact) +
2D Compatibility (PS) -21619 + (NN) -11823 + (LL) 920
1D Compatibility (HY) -10400 + (ID) 3600
Total energy: -126732.0 ( -81.50 by residue)
QMean score : 0.594
(partial model without unconserved sides chains):
PDB file :
Tito_3LV8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LV8-query.scw
PDB file :
Tito_Scwrl_3LV8.pdb
: