Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMH---NGNGNRDEPVVEEMLTSL--LAQAH--QAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
3TYZ Chain:B ((15-263))
LSRPQVMGILNVTPDSFSDGGCHNNLDQALQHAQRMLSAGATLIDIGGESTRPGAAEVSEQEELDRVVPVVEALAQRFDVWLSVDTSKAAVITESAHAGAHLIND-IRSLQEPGALEAAAKTGLPVCLMHMQGQPKNMQHSPYYDDLMTDINRFFQHHIERCVAAGIAKNKLLLDPGFGFGKNLAHNYQLLAHLSELHHFELPLLVGMSRKSMVGQLL--NVPPQQRVIGSVACAVIAAMQGAQIIRVHDVK-----------------------
General information:
TITO was launched using:
RESULT:
Template:
3TYZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126779 for 2015 contacts (-62.9/contact) +
2D Compatibility (PS) -27039 + (NN) -19913 + (LL) 1460
1D Compatibility (HY) -16400 + (ID) 4700
Total energy: -193371.0 ( -95.97 by residue)
QMean score : 0.662
(partial model without unconserved sides chains):
PDB file :
Tito_3TYZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TYZ-query.scw
PDB file :
Tito_Scwrl_3TYZ.pdb
: