Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEWSQIFHDITTKHDFKAMHDFLEKEYSTAIVYPDRENIYQAFDLTPFENIKVVILGQDPYHGPNQAHGLAFSVQPNAKFPPSLRNMYKELADDIGCVRQTPH--LQDWAREGVLLLNTVLTVRQGEANSHRDIGWETFTDEIIKAVSDYKEHVVFILWGKPAQQKIKLIDTSKHCIIKSVHPSPL-------SAYRGFFGSKPYSKANAYLESVGKSPINWCESEA
2J8X Chain:A ((31-229))
----------------------VRRLRTQATVYPEEDMCMAWARFCDPSDIKVVILGQDPYHG-GQANGLAFSVAYGFPVPPSLRNIYAELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERLKACVFMLWGAKAGDKASLINSKKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNFLREKGLGEIDW-----
General information:
TITO was launched using:
RESULT:
Template:
2J8X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94557 for 1470 contacts (-64.3/contact) +
2D Compatibility (PS) -20534 + (NN) -7546 + (LL) 2092
1D Compatibility (HY) -18400 + (ID) 4350
Total energy: -143295.0 ( -97.48 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_2J8X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2J8X-query.scw
PDB file :
Tito_Scwrl_2J8X.pdb
: