Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
3R3O Chain:A ((7-135))
-------------------------------------------------------------------------------------LHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPEFN------EKYGPEASAFAKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKGNNTHEQLLRKAEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
3R3O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49768 for 1033 contacts (-48.2/contact) +
2D Compatibility (PS) -13869 + (NN) -4173 + (LL) 6020
1D Compatibility (HY) -16000 + (ID) 6150
Total energy: -83940.0 ( -81.26 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_3R3O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R3O-query.scw
PDB file :
Tito_Scwrl_3R3O.pdb
: