Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE
1NDC Chain:A ((9-155))
-ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVESANREIALWFKPEELLTEVKP-NPNLYE
General information:
TITO was launched using:
RESULT:
Template:
1NDC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72881 for 1109 contacts (-65.7/contact) +
2D Compatibility (PS) -15744 + (NN) -3339 + (LL) 308
1D Compatibility (HY) -14400 + (ID) 4200
Total energy: -110256.0 ( -99.42 by residue)
QMean score : 0.579
(partial model without unconserved sides chains):
PDB file :
Tito_1NDC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NDC-query.scw
PDB file :
Tito_Scwrl_1NDC.pdb
: