Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYQPHYFQEVRKAQQESYSPYSQFKVGAYLKTKDGRTFYGTNVENASYPLSICAERASLVSAISQGYRPGDFESITVTVDADKPSSPCGACRQVLKELCDDDMPVYMTNHKGDMVMMTVAELLPFGFSGKDLE
3DMO Chain:A ((11-138))
---HHALIEAAKAAREKAYAPYSNFKVGAALVTNDGKVFHGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGETHGPIAPCGACRQVMIELGKPTLEVVLTNMQGDVRVTSAGDLLPDAFYLA---
General information:
TITO was launched using:
RESULT:
Template:
3DMO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48283 for 1043 contacts (-46.3/contact) +
2D Compatibility (PS) -14381 + (NN) -9497 + (LL) 476
1D Compatibility (HY) -9200 + (ID) 2950
Total energy: -83835.0 ( -80.38 by residue)
QMean score : 0.438
(partial model without unconserved sides chains):
PDB file :
Tito_3DMO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DMO-query.scw
PDB file :
Tito_Scwrl_3DMO.pdb
: