Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGIIGAMEEEVT-ILKNKLTQLSEISVAHVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADATAFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL
3NM4 Chain:B ((4-230))
-IGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLNALAKKIANEQHIALKEGVIASGDQFVHSKERKEFLVSEF-KASAVEMEGASVAFVCQKFGVPCCVLRSISDN-------SFDEFLEKSAHTSAKFLKSMVDEL
General information:
TITO was launched using:
RESULT:
Template:
3NM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -132146 for 1870 contacts (-70.7/contact) +
2D Compatibility (PS) -23668 + (NN) -10612 + (LL) 520
1D Compatibility (HY) -18000 + (ID) 3900
Total energy: -187806.0 ( -100.43 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3NM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NM4-query.scw
PDB file :
Tito_Scwrl_3NM4.pdb
: