Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKVHVFDHPLIQHKLSYIRDVNTGTKEFRELVDEVGMLMAYEVTRDLELQDVDIETPV-TKMTAKRLAG-KKLAIVPILRAGLGMTDGILSLVPAARVGHIGLYRD-PETLKAVEYFAKLPQDITER--QIIVVDPMLATGASAIEAITSLKKRGAKNIRFMCLIAAPEGVEKMHEAHPDVDIYIAALDEKLNDKAYITPGLGDAGDRLFGTK
1XTT Chain:B ((3-216))
---LYVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASR-VPKDMDVYIYYKKIP-DIRAKVDNVIIADPMIATASTMLKVLEEVVKANPKRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG--
General information:
TITO was launched using:
RESULT:
Template:
1XTT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -172314 for 1642 contacts (-104.9/contact) +
2D Compatibility (PS) -21479 + (NN) -1534 + (LL) 404
1D Compatibility (HY) -18400 + (ID) 3550
Total energy: -216873.0 ( -132.08 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_1XTT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XTT-query.scw
PDB file :
Tito_Scwrl_1XTT.pdb
: