Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNMNQTIMDAFHFRHATKQFDPQKKVSKEDFETILESGRLSPSSLGLEPWKFVVIQDQALRDELKAHSW-GAAKQLDTASHFVLIFARKN-VTSRSPYVQHMLRDIKKYEAQTIPAVEQKFDAFQADFHISDNDQALYDWSSKQTYIALGNMMTTAALLGIDSCPMEGFSLDTVTDILANKGILDTE-QFGLSVMVAFGYRQQDPPKNKTRQAYEDVIEWVGPKE
3GBH Chain:A ((5-212))
-LTRINDFNEVLNSRKSVKVFDENYKIPREEMDEIITKATKAPSSVNMQPWRIAVVQSDEMKEKVKESFGFNSR-QLTTSSAMLIIFGDLQNYEKAEQIYGDAVEQ-QLMTEDIKAQLLDWIL-P---YYKNLSREGMKDIVNIDSSLMAMQLMLTAKAHGYDTNPIGGFDKENIADIIGY----D-SDRYVPVLAIAIGKKAQDA-HDSVRLPIDDVREF-----
General information:
TITO was launched using:
RESULT:
Template:
3GBH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79001 for 1489 contacts (-53.1/contact) +
2D Compatibility (PS) -21737 + (NN) -4232 + (LL) 1040
1D Compatibility (HY) -10400 + (ID) 2050
Total energy: -116380.0 ( -78.16 by residue)
QMean score : 0.445
(partial model without unconserved sides chains):
PDB file :
Tito_3GBH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GBH-query.scw
PDB file :
Tito_Scwrl_3GBH.pdb
: