Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKMNAPDGVAVWVNEDRCKGCDICVSVCPAGVLGMGIEKERVLGKVAKVAYPESCIGCVQ-CELHCPDFAIYVADRKDFKFAKVSKEAQERSEKVKANKYMLLEETILEGRGK
1VJW Chain:A ((3-58))
-----------VRVDADACIGCGVCENLCP-DVFQLGDD-----GK-AKVLQPETDLPCAKDAADSCPTGAISVE---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VJW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60557 for 392 contacts (-154.5/contact) +
2D Compatibility (PS) -5575 + (NN) -536 + (LL) 4776
1D Compatibility (HY) -2800 + (ID) 1200
Total energy: -65892.0 ( -168.09 by residue)
QMean score : 0.327
(partial model without unconserved sides chains):
PDB file :
Tito_1VJW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VJW-query.scw
PDB file :
Tito_Scwrl_1VJW.pdb
: