Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQAKIKNKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIRSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK
1YBD Chain:A ((4-238))
---QIKYKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSM-DRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGED-EGTLVH
General information:
TITO was launched using:
RESULT:
Template:
1YBD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180828 for 1979 contacts (-91.4/contact) +
2D Compatibility (PS) -25917 + (NN) -11562 + (LL) 504
1D Compatibility (HY) -24800 + (ID) 5750
Total energy: -248353.0 ( -125.49 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_1YBD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YBD-query.scw
PDB file :
Tito_Scwrl_1YBD.pdb
: