Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSNPNLSFYCNECERFESFLKNHYLHLEGFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCSLVGKKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAILRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNSLLESRIIVELVKILSANGGIKGMILGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLIMGLVASGINDEELLKWLQAFGLKMGLCFQVLDDIIDVTQDEKESGKTTHLD--SAKNSFVNLLGLKKASGYAQTLKTEILNDLNALEPTYLSLQENLNALLNTLFKGKT |
3PDE Chain:A ((9-297)) | -----IAFEDQWVPALNAPLKQAILADSQ-DAQLAAAMTYSVLAGGKRLRPLLTVATMQSLGVTF----VPERHWRPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ-APEAQWPAYLQFADAFGLAFQIYDDILDVVSS-----------ADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGLPTSTQ--RDDLAAFFSYFDTERV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PDE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -172095 for 2304 contacts (-74.7/contact) +
2D Compatibility (PS) -28804 + (NN) -12612 + (LL) 656
1D Compatibility (HY) -12000 + (ID) 4700
Total energy: -229555.0 ( -99.63 by residue)
QMean score : 0.496
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