Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIVKRLNPDALKSALQKIGPEKIAQTHMRQKGVSFVFEIQHLPLSAALILKQEAISVGGDFATPRDCILAKEPFYDGVLIASAKQLERLIVKCHSQPFGLKHLAQELKSHLKAKKPNAPQIMAILNLTPDSFYEKSRFDSK-KALEEIYQWLEKGITLIDIGAASSRPQSEIIDPKVEQDRLKEILLEIKSQKLYQRAQFSIDTYHATTAQMALEHYFSILNDVSGFNS-IEMLEVARDYQPTCILMHAQKTPKD-MQENVFYHNLFDEMDRFFKEKLEVLEKYTLQ--DIILDIGFGFAKLKEHNLALIKHLSHFLKFKKPLLVGASRKNTIGLITGR------EVQDRLAGTLSLHLMALQNGASILRAHDIDEHIDLIKVFKSLEETD |
| 1EYE Chain:A ((5-274)) | ---------------------------------------------------------------------------------------------------------------------PVQVMGVLNVTDDSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGG--------------ETSRVIPVVKELAAQ----GITVSIDTMRADVARAALQNGAQMVNDVSGGRADPAMGPLLAEADVPWVLMHWRAVSADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVISALAALHGAWGVRVHDVRASVDAIKVVEAWMGAE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1EYE.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -171323 for 2145 contacts (-79.9/contact) +
2D Compatibility (PS) -26683 + (NN) -16312 + (LL) 10312
1D Compatibility (HY) -13600 + (ID) 3500
Total energy: -221106.0 ( -103.08 by residue)
QMean score : 0.484
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