Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLFDYAPLSLAWREFLQSEFKKPYFLEIEKRYLEALKSPKTIFPKSSNLFCAFNLTPPYAVKIILLGQDPYHSTYLENEQELPVAMGLSFSVEKNAPIPPSLKNIFKELHANL-GVPVPCCGDLSAWAKRGMLLLNAILSVEKNQAASHKYIGWEAFSDQILIRLFETTTPLIVVLLGKVAQKKIALIPKNKHIIITAPHPSPLSRG--FLGSGVFTSVQKAYREVYRKDFDFSL
3FCI Chain:A ((2-222))
------EFFGESWKKHLSGEFGKPYFIK-LMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPN--------QAHGLCFSVQRPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKE
General information:
TITO was launched using:
RESULT:
Template:
3FCI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143678 for 1759 contacts (-81.7/contact) +
2D Compatibility (PS) -23613 + (NN) -12282 + (LL) 1364
1D Compatibility (HY) -14000 + (ID) 4150
Total energy: -196359.0 ( -111.63 by residue)
QMean score : 0.624
(partial model without unconserved sides chains):
PDB file :
Tito_3FCI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3FCI-query.scw
PDB file :
Tito_Scwrl_3FCI.pdb
: