Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAA-----FLNIAVEIETDFPPIDLLDFCLALELELGR-VRLFKWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
3MCO Chain:A ((21-181))
MVQYIIGIGTNSGFTIENIHLAITALESQQNIRIIRKASLYSSKAVLK--APKEWDIRFLNTAVKISSSLKPDELLVLLKDIELKIGRDLNAPAWSPRVIDLDILAAEDLILETDKLTIPHKELINRSFALAPLLELS---------------------------
General information:
TITO was launched using:
RESULT:
Template:
3MCO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104194 for 966 contacts (-107.9/contact) +
2D Compatibility (PS) -13906 + (NN) -4268 + (LL) 1784
1D Compatibility (HY) -11200 + (ID) 2450
Total energy: -134234.0 ( -138.96 by residue)
QMean score : 0.385
(partial model without unconserved sides chains):
PDB file :
Tito_3MCO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MCO-query.scw
PDB file :
Tito_Scwrl_3MCO.pdb
: