Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTEVKKQFPKGFLWGGATAANQVEGAYDVDGKGLSTADMVKFIPKEERTKDLELDVSKAEIEAIIAGKVEGRFPKRDGVDFYHHYKEDIALFAEMGFKTFRLSLNWARIFPNGDDKEPNEKGLEFYDKVFDELLKYDIEPLVTLSHYETPLNLTLKYNGWADRRVIGFFTNYAETVFKRYKNKVKYWLTFNEINVISLSAYTGGGVLLEDAKNPLELSYQAGHHQFVASALATKLAHEIIPGSQVGCMLARMATYP-ATNNPDDILKAQYENQQNLFFTDVHARGEYPSFMNRFFQENDIHIVKEVGDDEILKAHTVDFISFSYYMSLSATASPEGDRSAGNLMGGVKNEYLESSDWGWQIDPKGLRWTLNDLYSRYELPLFIVENGLGAYDTVEEDGKIHDDYRIDYLRKHIEQMKEAIADGVDLMGYTSWGPIDLVSASTSEMSKRYGFIYVDQDDWGKGTLERSRKDSFFWYKKVIETNGEDLD |
1TR1 Chain:B ((4-441)) | ------QFPQDFMWGTATAAYQIEGAYQEDGRGLSIWDTFAHTP----------------------GKVFNGDNGNVACDSYHRYEEDIRLMKELGIRTYRFSVSWPRIFPNG-DGEVNQKGLDYYHRVVDLLNDNGIEPFCTLYHWDLPQALQ-DAGGWGNRRTIQAFVQFAETMFREFHGKIQHWLTFNEPWCIAFLSNMLG--VHAPGLTNLQTAIDVGHHLLVAHGLSVRRFRELGTSGQIGIAPNVSWAVPYSTSEEDKAACARTISLHSDWFLQPIYQGSYPQFLVDWFAEQGATVPIQDGDMDII-GEPIDMIGINYYSMSVNRFNPE----AGFLQSEEINMGLPVTDIGWPVESRGLYEVLHYLQKYGNIDIYITENGACINDEV-VNGKVQDDRRISYMQQHLVQVHRTIHDGLHVKGYMAWSLLDNFEWAEG-YNMRFGMIHVDFR-----TQVRTPKESYYWYRNVVSNN----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1TR1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157799 for 3963 contacts (-39.8/contact) +
2D Compatibility (PS) -46009 + (NN) -13191 + (LL) 2928
1D Compatibility (HY) -26400 + (ID) 7950
Total energy: -248421.0 ( -62.69 by residue)
QMean score : 0.511
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