Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKPLVGINMKNYINTRAQTSEWLEATIPLLGNFSDVDTFIF-PSMGTLETTANLLAGTSFGF--GPQNMAPEKSGPLTGEFSVESIIDLSANYVEIGHAERKNLFHEKTSEIAKKIQLALDEKITPVVCVGEGIRANDTNELKNALKKQIEALFDTIQVTQFKNVVLAYEPEWAIGKANSADTDYIESAHQALREIIRELGGDET--LVRIIYGGSVSKENAAEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG
3UWW Chain:A ((9-257))
MRTPIIAGNWK--MNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVVIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLL--------
General information:
TITO was launched using:
RESULT:
Template:
3UWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116532 for 2016 contacts (-57.8/contact) +
2D Compatibility (PS) -26984 + (NN) -11746 + (LL) 360
1D Compatibility (HY) -12000 + (ID) 4050
Total energy: -170952.0 ( -84.80 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_3UWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWW-query.scw
PDB file :
Tito_Scwrl_3UWW.pdb
: