Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLTEDKRRIEQLENDIAKQLTENFISEMSKLGINKEKIIAWVKKVEEVEVNVSGK
3BY6 Chain:A ((4-120))
MAITQKRPVYLQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRTIPGKGTFITGNTASVKNSNQNRLLADLSQVIAELIKSGVKGERIKKIVNDILG--------
General information:
TITO was launched using:
RESULT:
Template:
3BY6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47571 for 728 contacts (-65.3/contact) +
2D Compatibility (PS) -12449 + (NN) -2059 + (LL) 464
1D Compatibility (HY) -7200 + (ID) 1800
Total energy: -70615.0 ( -97.00 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_3BY6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BY6-query.scw
PDB file :
Tito_Scwrl_3BY6.pdb
: