Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VNDIIHDYLLKNIPKSSPFFKELEAYAKE-NEVPIMEPDSLYCLLQILDIQKPKRILELGTAIGYSALKMADKLP-DAEIITVERDEERYEQAIHNIQRYGASDRVKVLLTDAIEGAEE---------------ILAHGPFDAIFIDAAKAQYEKFFHIYTVSLAENGVIYSDNVLFKGLALDMTPEKQRKLRVARKMRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS
2HNK Chain:A ((9-232))
-TESLEEYIFRNSVREPDSFLKLRKETGTL--NMQISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFG-PSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADNVLWDGSVADLSHQ----EPSTVGIRKFNELVYNDSLVDVSLVPIADGVSLVRKRL-----
General information:
TITO was launched using:
RESULT:
Template:
2HNK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90953 for 1644 contacts (-55.3/contact) +
2D Compatibility (PS) -22485 + (NN) -13684 + (LL) 580
1D Compatibility (HY) -13200 + (ID) 2500
Total energy: -142242.0 ( -86.52 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_2HNK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2HNK-query.scw
PDB file :
Tito_Scwrl_2HNK.pdb
: