Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEIKDLQDYVAIVNDWPKKGIVFKDITPLMNDGEAYRFATDKIVEYAKELKIDIIVGPEARGFIIGCPVAYALGIGFAPVRKPGKLPRETIEMEYDLEYG-TNKLSMHSDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGIVAGCAFLIELK--ELEGHKKLN--GYDRLILMKL
1L1Q Chain:A ((3-179))
MSVADAHALIKTIPDFPTKGIAFKDLSDILSTPAALDAVRKEVTAHYKDVPITKVVGIESRGFILGGIVANSLGVGFVALRKAGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGGTLLAAIELCETAGVKPENIYINVLYEIEALKGREKVGQKCTRLFSVIR-
General information:
TITO was launched using:
RESULT:
Template:
1L1Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122956 for 1382 contacts (-89.0/contact) +
2D Compatibility (PS) -18130 + (NN) 734 + (LL) 176
1D Compatibility (HY) -14800 + (ID) 2750
Total energy: -157726.0 ( -114.13 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_1L1Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1L1Q-query.scw
PDB file :
Tito_Scwrl_1L1Q.pdb
: