Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLRGILPFAHDTLRKV-VRSGDYVVDATCGNGHDTLLLAELVGINGHVLGFDIQQLAIDATNTR-LENAGVSSQVELVCASHARIPEYTSKPVRAAIFNLGYLPGGDKEITTTADSTLESIGHLMELLEVGGVIILVIYHGHPAG-------------KQEKDAVMTFCEAIPQQDFHVLSYNFINQKNDAPFVIIIEKRKPRQS
3UJC Chain:A ((44-206))
---------TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYG--AHTHGIDICSNIVNMANERVSGN----NKIIFEANDILTKEF-PENNFDLIYSRDAILALSL-------ENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKDL--------------------
General information:
TITO was launched using:
RESULT:
Template:
3UJC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98626 for 1101 contacts (-89.6/contact) +
2D Compatibility (PS) -16065 + (NN) -6841 + (LL) 2900
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -124082.0 ( -112.70 by residue)
QMean score : 0.425
(partial model without unconserved sides chains):
PDB file :
Tito_3UJC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UJC-query.scw
PDB file :
Tito_Scwrl_3UJC.pdb
: