Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPTFHADKPIYSQISDWMKKQMITGEWKGEDKLPSVREMGVQLAVNPNTVSRAYQELERAGYIYAKRGMG-SFVT-SDKALFDQLKIELADAITERFLEEAKSIGLDDQAAIELLIKRSRNHE
2DU9 Chain:A ((3-118))
--------VPLYKQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYKKRGIGMFVSAQAPALIRERRDAAFAATYVAPLIDESIHLGFTRARIHALLDQVAESRG
General information:
TITO was launched using:
RESULT:
Template:
2DU9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27368 for 700 contacts (-39.1/contact) +
2D Compatibility (PS) -12511 + (NN) -6033 + (LL) 284
1D Compatibility (HY) -6800 + (ID) 1200
Total energy: -53628.0 ( -76.61 by residue)
QMean score : 0.596
(partial model without unconserved sides chains):
PDB file :
Tito_2DU9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DU9-query.scw
PDB file :
Tito_Scwrl_2DU9.pdb
: